After a normal reset the red led will turn on after ~5 seconds and will stay on for ~30 seconds.
When a double reset is succesful the red led will NOT turn on and you will get a different com port.
This should be possible since you were able to load the tracker software.
Can you load an empty sketch to the board. This will remove the tracker software.
Can you let me know if the message is also there with the empty sketch.